http://people.tribe.net/a5a0b714-1aee-4570-abeb-e96c50bd81c9/blog Tribe.net. Local Connections http://people.tribe.net/a5a0b714-1aee-4570-abeb-e96c50bd81c9/blog/97ac62af-30dc-4726-b726-721ee3886492 <div> Department of Computer Science and Engineering The Pennsylvania State University Office: 346D IST Building Phone: +1(814) 404-0830 E-mail: jijeong@cse (dot) psu (dot) edu Jieun Jeong is a Ph.D candidate in the Department of Computer Science and Engineering, Pennsylvania State University. Jieun Jeong received her B.A. in Computer Science from the University of Texas at Austin. Research Interests * Application of computer science and mathematics to the problems in biology. * Computational Systems Biology, Protein Structure Prediction, Algorithm Design, and Probabilistic Analysis. Publications Journal Articles * Low cost search in scale-free networks [pdf] [preprint] Jieun Jeong and Piotr Berman Physical Review E ,75:036104 (2007) * Consistent sets of secondary structures in proteins [pdf] [preprint] Piotr Berman and Jieun Jeong Algorithmica, To appear (published online first, 10 November 2007) * On cycles in the transcription network of Saccharomyces cerevisiae Jieun Jeong and Piotr Berman * Fold classification based on secondary structure -- how much is gained by including loop topology? [pdf] Jieun Jeong, Piotr Berman, Teresa Przytycka. BMC Structural Biology, 6:3 (2006) Refereed Conference Proceedings * Packing to angles and sectors [pdf] Piotr Berman, Jieun Jeong, Shiva Kasiviswanathan, Bhuvan Urgaonkar. Proceedings of ACM Symposium on Parallel Algorithms and Architectures (SPAA), 171-180 (2007) (A preliminary version appeared as ECCC technical report. ECCC TR06-030) * Bringing folding pathways into strand pairing prediction [pdf] Jieun Jeong, Piotr Berman, Teresa Przytycka. The Workshop on Algorithms in Bioinformatics (WABI), 38-48 (2007) Papers in review * On cycles in the transcription network of Saccharomyces cerevisiae Jieun Jeong and Piotr Berman Teaching Experience * Spring 2006 - Teaching Assitant for Jonathan Goldtine's undergrauate course: "Data Structures and Algorithms" * Fall 2005 - Teaching Assistant for Martin Furer's graduate course: "Algorithm Design and Analysis" * Fall 2005 - Teaching Assistant for Martin Furer's undergraduate course: "Theory of Automata, Language and Computability" * Spring 2005 - Teaching Assistant for Piotr Berman's graduate course: "Theory of Graphs and Networks" Talks/ Poster presentations * Cycles in the transcription network of S. cerevisiae [abstract] Jieun Jeong and Piotr Berman Poster at RECOMB Regulatory Genomics 2007, MIT/Broad, Oct 11-13, 2007. * Consistent sets of secondary structures in proteins [abstract][slides in pdf][manuscript in pdf] Piotr Berman and Jieun Jeong DIMACS Workshop on Information Processing by Protein Structure in Molecular Recognition, Rutgers University, June 13-14, 2005. Poster at RECOMB 2006, Venice Lido, April 2-5, 2006. * Predicting protein structure from its approximation Jieun Jeong, Piotr Berman and Teresa Pryzycka CCGB Seminar, Penn State University, June 29, 2005. http://claimid.com/jieunj http://www.linkedin.com/in/jieunjeong http://www.ziggs.com/apps/profile/bio.aspx?uid=34504 http://jieunjeong.vox.com/profile/ http://www.squidoo.com/jieunjeong</div> Thu, 10 Jan 2008 21:30:24 GMT http://people.tribe.net/a5a0b714-1aee-4570-abeb-e96c50bd81c9/blog/97ac62af-30dc-4726-b726-721ee3886492 Jieun 2008-01-10T21:30:24Z